PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5022_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 319aa    MW: 35610.6 Da    PI: 9.4406
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5022_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP94.78.6e-3057127178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +CqvegC++dls+ak+y++rhkvC vhsk+++v+vsgl+qr       fh+lsefD ekrsCrrrLa hnerrrk+qa
  RrC5022_p1  57 RCQVEGCRMDLSNAKTYYSRHKVCCVHSKSSKVIVSGLHQR-------FHQLSEFDLEKRSCRRRLACHNERRRKPQA 127
                 6**************************************97.......7**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-2151112IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.58155125IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-2956129IPR004333Transcription factor, SBP-box
PfamPF031103.5E-1958124IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELLKGSGKN QPESAGSSST LSGGLRFGQK IYFEDGSGVG LTKNRVNNTG RKSTTARCQV  60
EGCRMDLSNA KTYYSRHKVC CVHSKSSKVI VSGLHQRFHQ LSEFDLEKRS CRRRLACHNE  120
RRRKPQATTT LLTSRFANIA PSLYGNAIRG VLRDPATWST TARGSAPWQS HQLMNVFSYG  180
NSSFTNSTDS SCALSLLSNS NPAQQEQQPL QTPTNTWRPS LNFDSDRVTM AQPPHVSIQN  240
QYLNQTWEFM SGEKSSEHCI SPALGLNQLS EPVDFQISNG TTTMGGFELS LHQQVLRQYL  300
EPENTRAYDS SPQQFNWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-20581241184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894451e-141AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591803.10.0PREDICTED: squamosa promoter-binding-like protein 15
SwissprotQ9M2Q61e-147SPL15_ARATH; Squamosa promoter-binding-like protein 15
TrEMBLA0A0D3CUG00.0A0A0D3CUG0_BRAOL; Uncharacterized protein
STRINGBra003305.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.11e-141squamosa promoter binding protein-like 15